G@ > !SpA' ' /'H*; I'S '* * $; &zfn.mpdl.mpg.de/data/Reihe_B/53/ZNB-1998-53b-1188.pdfThis work has...

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This work has been digitalized and published in 2013 by Verlag Zeitschrift für Naturforschung in cooperation with the Max Planck Society for the Advancement of Science under a Creative Commons Attribution 4.0 International License. Dieses Werk wurde im Jahr 2013 vom Verlag Zeitschrift für Naturforschung in Zusammenarbeit mit der Max-Planck-Gesellschaft zur Förderung der Wissenschaften e.V. digitalisiert und unter folgender Lizenz veröffentlicht: Creative Commons Namensnennung 4.0 Lizenz. Synthesis and Crystal Structure of N-[(15,4/?)-2-Oxo-pinanyl]-/3-alanine Methylester Barbara Albert3, Martin Jansen*b, Jörg Jakobic, Eberhard Steckhanc 3 Institut für Anorganische Chemie, Rheinische Friedrich-Wilhelms-Universität Bonn, Gerhard-Domagk-Str. 1. D-53121 Bonn. E-mail: [email protected] b Max-Planck-Institut für Festkörperforschung, Heisenbergstr. 1, D-70569 Stuttgart c Kekule-Institut für Organische Chemie und Biochemie, Rheinische Friedrich-Wilhelms-Universität Bonn, Gerhard-Domagk-Str. 1, D-53121 Bonn Z. Naturforsch. 53 b, 1188-1190 (1998); received April 17, 1998 N-[( 1 S,4i?)-2-Oxo-pinanyl]-/3-alanineMethylester, Chiral /3-Alanine Equivalent, Crystal Struc ture, Hydrogen Bond, Electrochemical Modification The title compound, N-[(lS,4/?)-2-oxo-pinanyl]-/3-alanine methylester, is an important start ing material for the electrochemical preparation of chiral amidoalkylation reagents in the syn thesis of chiral /^-substituted /3-amino acid derivatives. The investigation of its crystal structure reveals an arrangement of the carbonyl group and the amine function, which is influenced by a hydrogen bonding interaction. This conformation makes the molecule especially appropriate for further synthetical modification. Introduction The development of new routes for the enantios elective synthesis of /^-substituted /3-amino acids is considered to be important because these com pounds are both interesting chiral, bifunctional sub strates in organic syntheses and physiologically ac tive substances [1], The title compound is a deriva tive of ketopinic acid. This kind of compound is a useful chiral auxiliary in the asymmetric synthesis of chiral /3-alanine equivalents [2], especially if it is possible to introduce diastereoselectively a side chain in the 3'-position of the /3-alanine moiety of the molecule. To assess the value of this molecule as a chiral /3-alanine equivalent, it seemed highly de sirable to elucidate its atomic arrangement by X-ray structure analysis. Results and Discussion N-[(15',4/?)-2-oxo-pinanyl]-/3-alanine methyl ester was synthesised from camphorsulfonyl chlo ride by oxidation to ketopinic acid and subse quent reaction with /3-alanine methylester [1, 3-5] (Scheme 1). Single crystals were grown by recrystallisa tion from cyclohexane and investigated by X-ray * Reprint requests to Prof. Dr. M. Jansen. 0932-0776/98/1000-1188 $ 06.00 (c) 1998 Verlag der Zeitschrift für Naturforschung. Tübingen • www.znaturforsch.com K Scheme 1. diffraction (Table I). The molecular structure is shown in Fig. 1 (see also the labelling scheme). The asymmetric unit contains one formula unit of the ti tle compound. The six-membered ring shows the expected boat-conformation. Bond distances and angles have typical values (Table II). The most in teresting feature of the crystal structure is an in tramolecular hydrogen bond between the oxygen atom of the carbonyl group (02) and the N atom of the amine function (Nl). The position of the bridging H atom (HI) was localised in the differ ence Fourier map. The Nl-Hl-02 angle of 135° and the 02-H1 distance of 2.05 A are typical for this type of hydrogen bonding interaction [7]. It is therefore reasonable to describe the molecular sit uation around the amine function as fairly rigid,

Transcript of G@ > !SpA' ' /'H*; I'S '* * $; &zfn.mpdl.mpg.de/data/Reihe_B/53/ZNB-1998-53b-1188.pdfThis work has...

Page 1: G@ > !SpA' ' /'H*; I'S '* * $; &zfn.mpdl.mpg.de/data/Reihe_B/53/ZNB-1998-53b-1188.pdfThis work has been digitalized and published in 2013 by V erlag Zeitschrift für Naturforschung

This work has been digitalized and published in 2013 by Verlag Zeitschrift für Naturforschung in cooperation with the Max Planck Society for the Advancement of Science under a Creative Commons Attribution4.0 International License.

Dieses Werk wurde im Jahr 2013 vom Verlag Zeitschrift für Naturforschungin Zusammenarbeit mit der Max-Planck-Gesellschaft zur Förderung derWissenschaften e.V. digitalisiert und unter folgender Lizenz veröffentlicht:Creative Commons Namensnennung 4.0 Lizenz.

Synthesis and Crystal Structure of N-[(15,4/?)-2-Oxo-pinanyl]-/3-alanine MethylesterBarbara Albert3, Martin Jansen*b, Jörg Jakobic, Eberhard Steckhanc3 Institut für Anorganische Chemie, Rheinische Friedrich-Wilhelms-Universität Bonn,

Gerhard-Domagk-Str. 1. D-53121 Bonn. E-mail: [email protected] b Max-Planck-Institut für Festkörperforschung, Heisenbergstr. 1, D-70569 Stuttgart c Kekule-Institut für Organische Chemie und Biochemie,

Rheinische Friedrich-Wilhelms-Universität Bonn, Gerhard-Domagk-Str. 1, D-53121 Bonn

Z. Naturforsch. 53 b, 1188-1190 (1998); received April 17, 1998N-[( 1 S,4i?)-2-Oxo-pinanyl]-/3-alanineMethylester, Chiral /3-Alanine Equivalent, Crystal Struc­ture, Hydrogen Bond, Electrochemical Modification

The title compound, N-[(lS,4/?)-2-oxo-pinanyl]-/3-alanine methylester, is an important start­ing material for the electrochemical preparation of chiral amidoalkylation reagents in the syn­thesis of chiral /^-substituted /3-amino acid derivatives. The investigation of its crystal structure reveals an arrangement of the carbonyl group and the amine function, which is influenced by a hydrogen bonding interaction. This conformation makes the molecule especially appropriate for further synthetical modification.

Introduction

The development of new routes for the enantios­elective synthesis of /^-substituted /3-amino acids is considered to be important because these com­pounds are both interesting chiral, bifunctional sub­strates in organic syntheses and physiologically ac­tive substances [1], The title compound is a deriva­tive of ketopinic acid. This kind of compound is a useful chiral auxiliary in the asymmetric synthesis of chiral /3-alanine equivalents [2], especially if it is possible to introduce diastereoselectively a side chain in the 3'-position of the /3-alanine moiety of the molecule. To assess the value of this molecule as a chiral /3-alanine equivalent, it seemed highly de­sirable to elucidate its atomic arrangement by X-ray structure analysis.

Results and Discussion

N-[(15',4/?)-2-oxo-pinanyl]-/3-alanine methyl­ester was synthesised from camphorsulfonyl chlo­ride by oxidation to ketopinic acid and subse­quent reaction with /3-alanine methylester [1, 3-5] (Scheme 1).

Single crystals were grown by recrystallisa­tion from cyclohexane and investigated by X-ray

* Reprint requests to Prof. Dr. M. Jansen.

0932-0776/98/1000-1188 $ 06.00 (c) 1998 Verlag der Zeitschrift für Naturforschung. Tübingen • www.znaturforsch.com K

Scheme 1.

diffraction (Table I). The molecular structure is shown in Fig. 1 (see also the labelling scheme). The asymmetric unit contains one formula unit of the ti­tle compound. The six-membered ring shows the expected boat-conformation. Bond distances and angles have typical values (Table II). The most in­teresting feature of the crystal structure is an in­tramolecular hydrogen bond between the oxygen atom of the carbonyl group (02) and the N atom of the amine function (Nl). The position of the bridging H atom (HI) was localised in the differ­ence Fourier map. The N l - H l - 0 2 angle of 135° and the 02-H1 distance of 2.05 A are typical for this type of hydrogen bonding interaction [7]. It is therefore reasonable to describe the molecular sit­uation around the amine function as fairly rigid,

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B. Albert et al. • Synthesis and Crystal Structure of N-[(lS,4/?)-2-Oxo-pinanyl]-/?-alanine Methylester 1189

Table I. Crystal and refinement data for N-[(lS,4/?)-2- oxo-pinanyl]-/3-alanine methylester.

Formula unit C14H21NO4Crystal system OrthorhombicSpace group P21212 1* (A) 10.196 (2)MA) 10.959 (2)c(A) 13.008 (3)V (A ) 1453.5 (5)Z 4Dcaic (Mg m-3) 1 .222Measured reflections 4603Independent reflections 2108Parameters 185Rim 0.0275H (mm-1) 0.0899 Range 0—>24h, k, I 0—̂ 11,-12—̂ 12,-1 4 —>14R(F)/wR(F2) 0.0438/0.1260S 0.960P m a x /P m in (eA ) 0.219/-0.162Extinction coefficient 0.070 (8)Flack parameter 0.1 (15)

Fig. 1. ORTEP diagram [6] of the title structure with 50% probability displacement ellipsoids. H atoms except HI are omitted for clarity. HI is shown with arbitrary radius.

the rotational freedom around the Cl-CIO bond be­ing reduced due to N-H-O interaction. This situa­tion should be retained also in the amidoalkylation

Table II. Selected bond distances and angleso in N- [(lS/U?)-2-oxo-pinanyl]-/3-alanine methylester (A/°).

010-C10 1.216(3) C12-C11 1.489(3)C12-C13 1.509(3) N1-C10 1.330(3)N l-C ll 1.459(3) Nl-Hl 0.91(3)0 2 -H 1 2.05(3)C 10 -N 1 -C 1 1 122.5(2) C10-N1-H1 118(2)010-C10-N1 1 2 1 .8(2 ) 010-C10-C1 121.3(2)

process via the intermediate N-acyliminium ion. Thus, the introduction of a nucleophile at C l l should take place predominately from the hindered Si-face resulting in the diastereoselective formation of the (^-product. This is, indeed, what is found in the amidoalkylation reaction after electrochemical methoxylation [1].

Experimental

The title compound was obtained by reaction of the acid chloride of ketopinic acid (made from (15,4/?)- ketopinic acid, 3.6 g, and SOCI2, 5 ml, refluxing for2 h) with ^-alanine methylester hydrochloride (2.76 g) and potassium carbonate (5 g) in chloroform (50 ml) at room temperature (yield 85%). Large, colourless crystals (columns) were grown by recrystallisation from cyclo- hexane; m.p. 51-53°C. The compound was characterised by 'H NMR, 13C NMR and infrared spectroscopy [1] as well as chemical analysis.C14H21NO4 (267.3):

Calcd C 62.90 H 7.92 N5.24% ,Found C 62.78 H 7.94 N5.55% .[a]D = +70.5 (c = 1.0, CHCI3). Data collection was

performed at room temperature (293(2) K) on an Enraf- Nonius CAD-4 diffractometer (MoKa radiation, lc - 29 scans). Cell parameters were determined from 24 reflec­tions (9 = 12.21 —► 22.48). The structure was solved by direct methods (SHELXS86 [8]) and refined on F2 us­ing the program SHELXL93 [9]. All H atoms except for HI were treated as riding atoms with C-H distances of 0.96 A [10],

[1] J. Jakobi, PhD thesis, Bonn (1995). [3] M. F. Halsanger, J. Heikes, Synthesis 801 (1981).[2] P. Brungs, K. Danielmeier, J. Jakobi, C. Nothhelfer, [4] W. C. M. C. Kokke, F. A. Varkevisser, J. Org. Chem.

A. Stahl, A. Zietlow, E. Steckhan, J. Chim. Phys. 93, 39, 1653 (1974).575 (1996).

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1190 B. Albert et al. ■ Synthesis and Crystal Structure o f N-[( IS,4/?)-2-Oxo-pinanyl]-/3-alanine Methylester

[5] a) P. D. Bartlett, L. H. Knox, Org. Synth. Collect. Vol. V, 196 (1973);b) P. D. Bartlett, L. H. Knox, Org. Synth. Collect. Vol. V, 689 (1973).

[6] C. K. Johnson: ORTEPII. Report ORNL-5138. Oak Ridge National Laboratory, Tennessee, USA (1976).

[7] R. Taylor, O. Kennard, J. Am. Chem. Soc. 104,5063 (1982).

[8] G. M. Sheldrick, Acta Crystallogr. A46,467 (1990).

[9] G. M. Sheldrick: SHELXL93. Program for the refinement of Crystal Structures. University of Göttingen, Germany (1993).

[10] Further details of the crystal structure investi­gation may be obtained from the Fachinforma- tionszentrum Karlsruhe, D-76344 Eggenstein-Leo- poldshafen, Germany (fax: (+49)7247-808666; e- mail: [email protected]), on quoting the de­pository number CSD-408918.